Index

A

all_turn_stats() (heteromotility.hmstats.GeneralFeatures method) alpha (heteromotility.hmsims.LevySims attribute) alphas (heteromotility.hmstats.MSDFeatures attribute) autocorr (heteromotility.hmstats.RWFeatures attribute)

autocorr_all() (heteromotility.hmstats.RWFeatures method) autocorr_max_tau (heteromotility.hmstats.RWFeatures attribute) average_xy() (in module heteromotility.hmstats) avg_moving_speed (heteromotility.hmstats.GeneralFeatures attribute)

B

bias_prop (heteromotility.hmsims.RWSims attribute) biased_random_walk() (heteromotility.hmsims.RWSims method)

biased_rwsim() (heteromotility.hmsims.RWSims method) brw_paths (heteromotility.hmsims.RWSims attribute)

C

calc_alphas() (heteromotility.hmstats.MSDFeatures method) calc_linearity() (heteromotility.hmstats.GeneralFeatures method) calc_minmax_speed() (heteromotility.hmstats.GeneralFeatures method) calc_moving_stats() (heteromotility.hmstats.GeneralFeatures method) calc_moving_variable_threshold() (heteromotility.hmstats.GeneralFeatures method) calc_msd() (heteromotility.hmstats.MSDFeatures method) calc_msd_distribution() (heteromotility.hmstats.MSDFeatures method) calc_net_distance() (heteromotility.hmstats.GeneralFeatures method) calc_ngaussalpha() (heteromotility.hmstats.RWFeatures method)

calc_progressivity() (heteromotility.hmstats.GeneralFeatures method) calc_spearman() (heteromotility.hmstats.GeneralFeatures method) calc_total_distance() (heteromotility.hmstats.GeneralFeatures method) cell_ids (heteromotility.hmdetail.DetailedBalance attribute) (heteromotility.hmstats.GeneralFeatures attribute) (heteromotility.hmstats.MSDFeatures attribute) (heteromotility.hmstats.RWFeatures attribute) cell_kurtosis (heteromotility.hmstats.RWFeatures attribute) compare_to_randwalk() (heteromotility.hmstats.RWFeatures method)

D

DetailedBalance (class in heteromotility.hmdetail) dfa_all() (heteromotility.hmstats.RWFeatures method) diff_kurtosis (heteromotility.hmstats.RWFeatures attribute) diff_linearity (heteromotility.hmstats.RWFeatures attribute)

diff_net_dist (heteromotility.hmstats.RWFeatures attribute) disp_var (heteromotility.hmstats.RWFeatures attribute) displacement_props() (heteromotility.hmstats.RWFeatures method) distance() (in module heteromotility.hmstats)

F

fbm2urw (heteromotility.hmsims.MultiSim attribute) fbm_mat() (heteromotility.hmsims.fBmsims method) fbm_paths (heteromotility.hmsims.fBmsims attribute) fbm_rw() (heteromotility.hmsims.MultiSim method)

fbm_series() (heteromotility.hmsims.fBmsims method) fbm_sim() (heteromotility.hmsims.fBmsims method) fbm_walker() (heteromotility.hmsims.fBmsims method) fBmsims (class in heteromotility.hmsims)

G

GeneralFeatures (class in heteromotility.hmstats)

gf (heteromotility.hmstats.RWFeatures attribute)

H

H (heteromotility.hmsims.fBmsims attribute) heteromotility.hmdetail (module) heteromotility.hmio (module)

heteromotility.hmsims (module) heteromotility.hmstats (module) hurst_mandelbrot() (heteromotility.hmstats.RWFeatures method) hurst_RS (heteromotility.hmstats.RWFeatures attribute)

I

import_centroids() (in module heteromotility.hmio)

import_tracksXY() (in module heteromotility.hmio) interval_range (heteromotility.hmstats.GeneralFeatures attribute)

J

join_paths() (heteromotility.hmsims.MultiSim method)

K

kurtosis_comparison() (heteromotility.hmstats.RWFeatures method)

L

largest_pow2() (heteromotility.hmstats.RWFeatures method) length (heteromotility.hmsims.fBmsims attribute) (heteromotility.hmsims.LevySims attribute) (heteromotility.hmsims.RWSims attribute) levy (heteromotility.hmsims.LevySims attribute) levy_flier() (heteromotility.hmsims.LevySims method)

levy_paths (heteromotility.hmsims.LevySims attribute) levy_scale (heteromotility.hmsims.LevySims attribute) levy_sim() (heteromotility.hmsims.LevySims method) LevySims (class in heteromotility.hmsims) linearity (heteromotility.hmstats.GeneralFeatures attribute) log_distributions (heteromotility.hmstats.MSDFeatures attribute)

M

make_displacement_dist() (heteromotility.hmstats.RWFeatures method) max_speed (heteromotility.hmstats.GeneralFeatures attribute) min_speed (heteromotility.hmstats.GeneralFeatures attribute) min_split (heteromotility.hmdetail.DetailedBalance attribute) moving_kurt() (heteromotility.hmstats.RWFeatures method) moving_kurt_comparison() (heteromotility.hmstats.RWFeatures method)

moving_tau (heteromotility.hmstats.GeneralFeatures attribute) msd_dist_all_cells() (heteromotility.hmstats.MSDFeatures method) msd_distributions (heteromotility.hmstats.MSDFeatures attribute) MSDFeatures (class in heteromotility.hmstats) multi_tau_split() (heteromotility.hmdetail.DetailedBalance method) MultiSim (class in heteromotility.hmsims)

N

net_distance (heteromotility.hmstats.GeneralFeatures attribute)

nongauss_coeff() (heteromotility.hmstats.RWFeatures method) nongaussalpha (heteromotility.hmstats.RWFeatures attribute)

O

obj (heteromotility.hmsims.fBmsims attribute) (heteromotility.hmsims.LevySims attribute) (heteromotility.hmsims.MultiSim attribute) (heteromotility.hmsims.RWSims attribute)

P

p_scale (heteromotility.hmsims.LevySims attribute) partial_acorr_all() (heteromotility.hmstats.RWFeatures method) power_fbm() (heteromotility.hmsims.MultiSim method) power_flier() (heteromotility.hmsims.LevySims method) power_paths (heteromotility.hmsims.LevySims attribute)

power_sim() (heteromotility.hmsims.LevySims method) power_urw() (heteromotility.hmsims.MultiSim method) progressivity (heteromotility.hmstats.GeneralFeatures attribute) pwr2fbm (heteromotility.hmsims.MultiSim attribute) pwr2urw (heteromotility.hmsims.MultiSim attribute)

R

random_walk() (heteromotility.hmsims.RWSims method) (heteromotility.hmstats.RWFeatures method) rescaled_range() (heteromotility.hmstats.RWFeatures method) run_comparative_randwalk() (heteromotility.hmstats.RWFeatures method)

rw_paths (heteromotility.hmsims.RWSims attribute) RWFeatures (class in heteromotility.hmstats) rwsim() (heteromotility.hmsims.RWSims method) RWSims (class in heteromotility.hmsims)

S

scale_range (heteromotility.hmsims.fBmsims attribute) sliding_windows() (heteromotility.hmdetail.DetailedBalance method) spearmanrsq (heteromotility.hmstats.GeneralFeatures attribute)

speed_range (heteromotility.hmsims.RWSims attribute) split_id_features() (heteromotility.hmdetail.DetailedBalance method) split_ids() (heteromotility.hmdetail.DetailedBalance method)

T

tau (heteromotility.hmsims.MultiSim attribute) tau_max (heteromotility.hmdetail.DetailedBalance attribute) tau_range (heteromotility.hmstats.GeneralFeatures attribute) theta_stats (heteromotility.hmstats.GeneralFeatures attribute)

time_moving (heteromotility.hmstats.GeneralFeatures attribute) total_distance (heteromotility.hmstats.GeneralFeatures attribute) turn_direction() (heteromotility.hmstats.GeneralFeatures method) turn_stats (heteromotility.hmstats.GeneralFeatures attribute)

V

vartau_kurtosis_comparison() (heteromotility.hmstats.RWFeatures method)

W

write_motility_stats() (in module heteromotility.hmio)