Heteromotility Documentation

Heteromotility is a tool for analyzing cell motility in a quantitative manner. Heteromotility takes timelapse imaging data as input and calculates 70+ ‘motility features’ that can be used to generate a ‘motility fingerprint’ for a given cell. By analyzing more features of cell motility than most common cell tracking methods, Heteromotility may be able to identify novel heterogenous motility phenotypes.

• Installation
• Tutorial
  • Motility Feature Quantification
  • Subpath Analysis
  • Unsupervised Clustering

• API
  • CLI Usage
    • Command Line API
      • Positional Arguments
      • Named Arguments
  • Library API
  • Motility Statistics Module
    • heteromotility/hmstats module
  • Path Subset Analysis Module
    • heteromotility/hmdetail module
  • Motility Simulation Module
    • heteromotility/hmsims module
  • I/O Module
    • heteromotility/hmio module

Indices and tables

• Index
• Module Index
• Search Page